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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26463912_26466188_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26463912 - 26466188
Intron Length:
2277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTATTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
CCTCTCCTATTC
Flanking Amino Acid:
FVLTNQTTWTGRQLVFFKTA
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
67
0.42
1.1
58
38.5
Major PPT
74.9
0.56
1
69.6
36.5
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
44.3
-0.4
1.8
51.44
40.2

Associated Gene:

Gene:
PKDCC
Ensembl Gene ID:
ENSAPLG00000012985
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013528
26429213 - 26466489
37277