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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2648883_2654951_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2648883 - 2654951
Intron Length:
6069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
CTGGGCTCACAT
Flanking Amino Acid:
YPRYTDDWFNSHGTRCAGEV
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
38.5
-0.7
2.2
52.59
48.1

Associated Gene:

Gene:
PCSK2
Ensembl Gene ID:
ENSAPLG00000014969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015649
2626560 - 2727776
101217