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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2655029_2673259_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2655029 - 2673259
Intron Length:
18231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATAACT
Flanking Amino Acid:
YLHPDLASNYNAQASYDFSS
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
52.7
0.16
2.3
82.09
39.1

Associated Gene:

Gene:
PCSK2
Ensembl Gene ID:
ENSAPLG00000014969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015649
2626560 - 2727776
101217