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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26600831_26601750_R

Intron Information:

Intron Rank:
143857
Intron Class:
major
Intron Phase:
Intron Coordinates:
26600831 - 26601750
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATATATATATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
43.4
-0.4
2
62.83
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026620
26600534 - 26602661
2128