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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2675685_2677379_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2675685 - 2677379
Intron Length:
1695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ACTGATGTATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTTCACT
Flanking Amino Acid:
DPLFTKQWYLINTGQADGTP
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
58.3
0.19
1
55.7
43.8
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
65.3
0.56
1.7
82.56
39.6

Associated Gene:

Gene:
PCSK2
Ensembl Gene ID:
ENSAPLG00000014969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015649
2626560 - 2727776
101217