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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26815965_26821025_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26815965 - 26821025
Intron Length:
5061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGACT
5'SS Class:
major
3'SS Sequence:
CTTTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TATACTTTATTT
Flanking Amino Acid:
RKETLSSAAKSGTEKKKEKP
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
69.1
41.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
33.9
-1.8
3.4
50.1
45.8
Minor BPS
62.5
0.47
1.6
77.73
39

Associated Gene:

Gene:
EML4
Ensembl Gene ID:
ENSAPLG00000012939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042427
26758534 - 26874500
115967
ENSAPLT00000042062
26672206 - 26874043
201838
ENSAPLT00000034155
26718994 - 26874500
155507
ENSAPLT00000024327
26718994 - 26874500
155507
ENSAPLT00000048294
26758534 - 26874486
115953