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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26827176_26839727_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26827176 - 26839727
Intron Length:
12552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTGTTTCAACA
Flanking Amino Acid:
DKHKDVIVSQEGEYIKMFMR
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
75.8
0.64
1
65.8
41
Major PPT
81.2
0.7
0.9
77.7
35.5
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
62.3
0.38
1.6
74.67
37.4

Associated Gene:

Gene:
EML4
Ensembl Gene ID:
ENSAPLG00000012939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024327
26718994 - 26874500
155507