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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26839852_26844662_F

Intron Information:

Intron Rank:
7
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
26839852 - 26844662
Intron Length:
4811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTATCCTTG
5'SS Class:
strong_minor
3'SS Sequence:
TATAAATGTATAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AAAACCTTGACT
Flanking Amino Acid:
LPPEKLKLEWVYGYRGRDCR
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.7
-0
1.3
46.2
44.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
62
0.27
1.1
54.9
44.3
Minor 5ss
88.7
1.3
1.2
81.9
38.3
Minor BPS
69.2
0.69
1.3
76.45
39.4

Associated Gene:

Gene:
EML4
Ensembl Gene ID:
ENSAPLG00000012939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034155
26718994 - 26874500
155507
ENSAPLT00000024327
26718994 - 26874500
155507
ENSAPLT00000048294
26758534 - 26874486
115953
ENSAPLT00000013494
26786156 - 26874043
87888
ENSAPLT00000042427
26758534 - 26874500
115967
ENSAPLT00000013486
26718994 - 26874500
155507
ENSAPLT00000042062
26672206 - 26874043
201838