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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26847889_26850165_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26847889 - 26850165
Intron Length:
2277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGATGG
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGCACCT
Flanking Amino Acid:
GVGCLDFSKADSGTHLCVID
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
63.7
43.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
86.5
0.82
0.6
85.6
21.6
Minor 5ss
37.8
-1.4
3.1
48.3
47.2
Minor BPS
45.3
-0.2
2.6
77.41
44.7

Associated Gene:

Gene:
EML4
Ensembl Gene ID:
ENSAPLG00000012939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034155
26718994 - 26874500
155507
ENSAPLT00000024327
26718994 - 26874500
155507
ENSAPLT00000048294
26758534 - 26874486
115953
ENSAPLT00000013494
26786156 - 26874043
87888
ENSAPLT00000042427
26758534 - 26874500
115967
ENSAPLT00000013486
26718994 - 26874500
155507
ENSAPLT00000042062
26672206 - 26874043
201838