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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26850262_26850975_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26850262 - 26850975
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTTCTGTTATTT
Flanking Amino Acid:
QKKSKVAEIKTTNEVVLAVE
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
83.9
0.76
0.8
81.4
34.9
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
49.6
0.05
2.2
76.56
40.7

Associated Gene:

Gene:
EML4
Ensembl Gene ID:
ENSAPLG00000012939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034155
26718994 - 26874500
155507
ENSAPLT00000024327
26718994 - 26874500
155507
ENSAPLT00000048294
26758534 - 26874486
115953
ENSAPLT00000013494
26786156 - 26874043
87888
ENSAPLT00000042427
26758534 - 26874500
115967
ENSAPLT00000013486
26718994 - 26874500
155507
ENSAPLT00000042062
26672206 - 26874043
201838