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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26855991_26861991_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26855991 - 26861991
Intron Length:
6001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTCACTGGAATT
Flanking Amino Acid:
AVVAIGTHSGRWFVLDAETR
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
82.8
0.74
0.8
74.2
35.9
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
44.4
-0.3
2.1
60.62
43.8

Associated Gene:

Gene:
EML4
Ensembl Gene ID:
ENSAPLG00000012939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024327
26718994 - 26874500
155507
ENSAPLT00000048294
26758534 - 26874486
115953
ENSAPLT00000013494
26786156 - 26874043
87888
ENSAPLT00000042427
26758534 - 26874500
115967
ENSAPLT00000013486
26718994 - 26874500
155507
ENSAPLT00000042062
26672206 - 26874043
201838
ENSAPLT00000034155
26718994 - 26874500
155507