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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26869483_26872954_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26869483 - 26872954
Intron Length:
3472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTACCATCACT
Flanking Amino Acid:
YTCVLGFQVFGVWPEGSDGT
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.8
0.56
0.8
73.3
31.7
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
49.9
0.07
2.1
72.16
44.3

Associated Gene:

Gene:
EML4
Ensembl Gene ID:
ENSAPLG00000012939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013494
26786156 - 26874043
87888
ENSAPLT00000042427
26758534 - 26874500
115967
ENSAPLT00000013486
26718994 - 26874500
155507
ENSAPLT00000042062
26672206 - 26874043
201838
ENSAPLT00000034155
26718994 - 26874500
155507
ENSAPLT00000024327
26718994 - 26874500
155507
ENSAPLT00000048294
26758534 - 26874486
115953