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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26895481_26897746_R

Intron Information:

Intron Rank:
151532
Intron Class:
major
Intron Phase:
Intron Coordinates:
26895481 - 26897746
Intron Length:
2266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAT
5'SS Class:
strong_major
3'SS Sequence:
GTCATTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTTCATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
27.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
72
0.49
1
69.2
41.7
Minor 5ss
28.3
-2.5
3.3
39.6
46.4
Minor BPS
70
0.61
1.6
78.78
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029095
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023524
26895117 - 26905050
9934