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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26897794_26904855_R

Intron Information:

Intron Rank:
151533
Intron Class:
major
Intron Phase:
Intron Coordinates:
26897794 - 26904855
Intron Length:
7062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGCATATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
100
1.24
0.5
100
0
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
55.4
0.25
1.6
70.19
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029095
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023524
26895117 - 26905050
9934