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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26935522_26939497_F

Intron Information:

Intron Rank:
135590
Intron Class:
major
Intron Phase:
Intron Coordinates:
26935522 - 26939497
Intron Length:
3976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTAATCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.9
0.61
0.9
70
36.1
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022950
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021240
26934854 - 26939685
4832