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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26997494_26998741_R

Intron Information:

Intron Rank:
137053
Intron Class:
major
Intron Phase:
Intron Coordinates:
26997494 - 26998741
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GCTTTCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
78.3
0.64
0.8
72.3
32.5
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
49.7
-0
2
63.67
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021236
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038400
26997300 - 26999844
2545
ENSAPLT00000036236
26997300 - 26999035
1736