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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26998879_26999794_R

Intron Information:

Intron Rank:
137055
Intron Class:
major
Intron Phase:
Intron Coordinates:
26998879 - 26999794
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTCTC
5'SS Class:
major
3'SS Sequence:
ACAAAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TATTCTTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.8
39.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
60.9
0.25
1
55.7
43.7
Minor 5ss
39
-1.2
3
50.6
40
Minor BPS
78.7
0.76
1.2
76.34
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021236
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038400
26997300 - 26999844
2545