About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_270483_273112_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
270483 - 273112
Intron Length:
2630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
LRCAVGKHYRELRVFPDKFV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.4
0.64
0.8
75.8
32.8
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
SLX4IP
Ensembl Gene ID:
ENSAPLG00000009267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036500
213038 - 289630
76593
ENSAPLT00000023216
240842 - 288185
47344
ENSAPLT00000009642
249812 - 288185
38374
ENSAPLT00000009639
213038 - 288185
75148