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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27054320_27055186_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27054320 - 27055186
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGACA
5'SS Class:
major
3'SS Sequence:
ACTCTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTAAACT
Flanking Amino Acid:
KVPDLQKIFQKADGLPVHLK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
72.3
39
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.3
0.57
0.8
69
30.9
Minor 5ss
38.1
-1.3
3.1
49.8
46.2
Minor BPS
67.7
0.63
1.6
83.79
37.4

Associated Gene:

Gene:
COX7A2L
Ensembl Gene ID:
ENSAPLG00000023038
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042247
27054176 - 27060821
6646