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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27055322_27060749_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27055322 - 27060749
Intron Length:
5428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCA
5'SS Class:
major
3'SS Sequence:
TTTATTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATACCTTGATA
Flanking Amino Acid:
AAASAAYSPQGLKPIVSTES
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.7
39.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.3
0.8
0.9
81.5
35.1
Minor 5ss
35
-1.7
3.5
47.9
47.8
Minor BPS
72.5
0.7
1.2
76.18
34.5

Associated Gene:

Gene:
COX7A2L
Ensembl Gene ID:
ENSAPLG00000023038
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042247
27054176 - 27060821
6646