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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2705727_2727584_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2705727 - 2727584
Intron Length:
21858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
ATAACCTCATGA
Flanking Amino Acid:
AEHGFGGVRKLPFLDTGYFF
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
71.9
31.5
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
84.7
0.78
0.7
83.9
24.2
Minor 5ss
30.1
-2.3
3.4
40.8
45.7
Minor BPS
44.7
-0.4
2
56.01
42.6

Associated Gene:

Gene:
PCSK2
Ensembl Gene ID:
ENSAPLG00000014969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015649
2626560 - 2727776
101217