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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27078480_27086914_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27078480 - 27086914
Intron Length:
8435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
PENRSVEEQSRIIEAICIGW
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.6
44.4
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
38
-1.4
3.2
52.2
44.6
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
KCNG3
Ensembl Gene ID:
ENSAPLG00000012895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013415
27077834 - 27087537
9704