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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27109828_27128153_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27109828 - 27128153
Intron Length:
18326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGCTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTAATTTCGACC
Flanking Amino Acid:
SLIMLADKHAKEVEEESETT
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.5
37.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
82.6
0.73
0.8
77.1
31.6
Minor 5ss
37
-1.5
2.7
44
38.5
Minor BPS
49.8
-0
1.5
62.79
36.7

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031311
27106701 - 27244774
138074
ENSAPLT00000022476
27106135 - 27243221
137087
ENSAPLT00000045807
27106135 - 27244774
138640
ENSAPLT00000022374
27095242 - 27223973
128732
ENSAPLT00000042865
27106135 - 27243221
137087
ENSAPLT00000012655
27095242 - 27241174
145933
ENSAPLT00000039354
27106135 - 27243221
137087