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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27128281_27139710_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27128281 - 27139710
Intron Length:
11430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CTTTACAAAAGT
Flanking Amino Acid:
QYESLPATHIRGKCSVALLN
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
73.6
0.53
1
69.5
41.6
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
44.9
-0.3
2.3
69.53
46.9

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031311
27106701 - 27244774
138074
ENSAPLT00000022476
27106135 - 27243221
137087
ENSAPLT00000045807
27106135 - 27244774
138640
ENSAPLT00000022374
27095242 - 27223973
128732
ENSAPLT00000042865
27106135 - 27243221
137087
ENSAPLT00000012655
27095242 - 27241174
145933
ENSAPLT00000039354
27106135 - 27243221
137087