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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27169177_27174416_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27169177 - 27174416
Intron Length:
5240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TTCTCCACGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
AAAASRDITLFHAMDTLHKH
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.3
0.39
0.9
67.3
33.8
Minor 5ss
33.2
-1.9
3.5
45.9
44.6
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042865
27106135 - 27243221
137087
ENSAPLT00000022374
27095242 - 27223973
128732
ENSAPLT00000039354
27106135 - 27243221
137087
ENSAPLT00000012655
27095242 - 27241174
145933
ENSAPLT00000031311
27106701 - 27244774
138074
ENSAPLT00000022476
27106135 - 27243221
137087
ENSAPLT00000045807
27106135 - 27244774
138640