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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27174606_27185535_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27174606 - 27185535
Intron Length:
10930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
ATTTTTCAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AATTTTTCAACT
Flanking Amino Acid:
KDFNDIRQDFKRLKAAEAES
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70
0.45
1
64.9
41
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
65.9
0.58
1.5
79.5
36.3

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022476
27106135 - 27243221
137087