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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27179804_27185535_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27179804 - 27185535
Intron Length:
5732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AATTTTTCAACT
Flanking Amino Acid:
WKTTDRYVQQKRLKAAEAES
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70
0.45
1
64.9
41
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
65.9
0.58
1.5
79.5
36.3

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039354
27106135 - 27243221
137087
ENSAPLT00000031311
27106701 - 27244774
138074
ENSAPLT00000022374
27095242 - 27223973
128732
ENSAPLT00000045807
27106135 - 27244774
138640
ENSAPLT00000012655
27095242 - 27241174
145933
ENSAPLT00000042865
27106135 - 27243221
137087