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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27185595_27188563_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27185595 - 27188563
Intron Length:
2969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTTTTCAAG
Flanking Amino Acid:
SKLKQVYIPTYNKPNPNQIS
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
0.9
78.7
29.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.6
0.82
0.9
86.9
31.1
Minor 5ss
35.7
-1.6
2.9
44
38.6
Minor BPS
54.6
-0
1.9
67.62
40.4

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031311
27106701 - 27244774
138074
ENSAPLT00000022476
27106135 - 27243221
137087
ENSAPLT00000045807
27106135 - 27244774
138640
ENSAPLT00000022374
27095242 - 27223973
128732
ENSAPLT00000042865
27106135 - 27243221
137087
ENSAPLT00000012655
27095242 - 27241174
145933
ENSAPLT00000039354
27106135 - 27243221
137087