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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27188689_27189845_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27188689 - 27189845
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCCATCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CATGCCCCAATT
Flanking Amino Acid:
LIGRACESCYTSQSHQWYSW
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76
0.58
0.7
74.5
29.4
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
47.6
-0.1
2
66.04
44.6

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031311
27106701 - 27244774
138074
ENSAPLT00000022476
27106135 - 27243221
137087
ENSAPLT00000045807
27106135 - 27244774
138640
ENSAPLT00000022374
27095242 - 27223973
128732
ENSAPLT00000042865
27106135 - 27243221
137087
ENSAPLT00000012655
27095242 - 27241174
145933
ENSAPLT00000039354
27106135 - 27243221
137087