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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27190710_27199192_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27190710 - 27199192
Intron Length:
8483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGATGT
5'SS Class:
major
3'SS Sequence:
TTGAAATTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATTCTTTGAAA
Flanking Amino Acid:
PINCAAIKAEYADRHCEIAG
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.5
36.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
70.3
0.46
1
66.3
43.9
Minor 5ss
42.1
-0.9
3.2
61
43.6
Minor BPS
69.9
0.62
1.3
76.34
34.1

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031311
27106701 - 27244774
138074
ENSAPLT00000022476
27106135 - 27243221
137087
ENSAPLT00000045807
27106135 - 27244774
138640
ENSAPLT00000022374
27095242 - 27223973
128732
ENSAPLT00000042865
27106135 - 27243221
137087
ENSAPLT00000012655
27095242 - 27241174
145933
ENSAPLT00000039354
27106135 - 27243221
137087