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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27215613_27241162_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27215613 - 27241162
Intron Length:
25550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
CTTCCCTCCATA
Flanking Amino Acid:
SSSHTTRTIMKNP*
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
74.8
0.56
0.8
68.7
30.7
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
49.3
-0
2
64.86
41.9

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012655
27095242 - 27241174
145933