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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27223194_27227509_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27223194 - 27227509
Intron Length:
4316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
AGTTGAATGACT
Flanking Amino Acid:
DGFFIATEETSAEAVRNLLT
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
62.2
0.3
1
59
38
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
45.3
-0.2
2.2
68.79
41.5

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042865
27106135 - 27243221
137087