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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27227538_27241162_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27227538 - 27241162
Intron Length:
13625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
CTTCCCTCCATA
Flanking Amino Acid:
SAEAVRNLLTKNP*
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.4
34.5
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
74.8
0.56
0.8
68.7
30.7
Minor 5ss
33.5
-1.9
3.1
42.4
44.3
Minor BPS
49.3
-0
2
64.86
41.9

Associated Gene:

Gene:
MTA3
Ensembl Gene ID:
ENSAPLG00000012098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042865
27106135 - 27243221
137087