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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27304569_27307250_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27304569 - 27307250
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
GCTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAATCATC
Flanking Amino Acid:
SNSDIWIWQLVLLEKRRRMC
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
33.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
81.4
0.71
0.9
72.7
42.2
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
46.9
-0.2
2.2
65.9
39.5

Associated Gene:

Gene:
HAAO
Ensembl Gene ID:
ENSAPLG00000011743
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026209
27304434 - 27338686
34253