Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27306066_27307250_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27306066 - 27307250

Intron Length:

1185

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGTGAC

5'SS Class:

major

3'SS Sequence:

TCTTTCCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAA

U12 Branch Point Sequence:

GAAAACTAAAAG

Flanking Amino Acid:

SNSDIWIWQLEGASTVTMDG

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

70.2

33.9

Major BPS

68.7

0.47

0.9

67.9

Major PPT

87.7

0.85

0.6

85.5

21.9

Minor 5ss

39.2

-1.2

3.1

48.3

42.5

Minor BPS

42.1

-0.7

1.9

41.99

41.5

Associated Gene:

Gene:

HAAO

Ensembl Gene ID:

ENSAPLG00000011743

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041480

27304490 - 27338686

34197

ENSAPLT00000012260

27304490 - 27338686

34197