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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27307320_27308431_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27307320 - 27308431
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
AATCCATTACTT
Flanking Amino Acid:
SIFGDNFETEVIAYGPGTTE
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
90.3
0.91
0.6
84.6
30.3
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
50.8
0.1
1.9
70.6
40

Associated Gene:

Gene:
HAAO
Ensembl Gene ID:
ENSAPLG00000011743
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041480
27304490 - 27338686
34197
ENSAPLT00000026209
27304434 - 27338686
34253
ENSAPLT00000012260
27304490 - 27338686
34197