Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27308578_27319816_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27308578 - 27319816

Intron Length:

11239

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGTAA

5'SS Class:

strong_major

3'SS Sequence:

GCTGCATTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

GCTGCATTTACA

Flanking Amino Acid:

RQYKTGKPNPDELLKETPFP

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

72.1

35.8

Major BPS

71.2

0.53

37.5

Major PPT

73.2

0.52

64.9

40.4

Minor 5ss

-1.7

3.4

46.3

Minor BPS

48.6

-0.1

61.26

44.3

Associated Gene:

Gene:

HAAO

Ensembl Gene ID:

ENSAPLG00000011743

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012260

27304490 - 27338686

34197

ENSAPLT00000041480

27304490 - 27338686

34197

ENSAPLT00000026209

27304434 - 27338686

34253