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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_273202_285737_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
273202 - 285737
Intron Length:
12536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTAAACC
Flanking Amino Acid:
NAWTCEEGALKEEVSSGTSE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
75.1
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.1
0.5
1.1
69.7
40.3
Minor 5ss
42.2
-0.9
2.4
48.9
42.2
Minor BPS
59.2
0.27
1.6
67.53
38.7

Associated Gene:

Gene:
SLX4IP
Ensembl Gene ID:
ENSAPLG00000009267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036500
213038 - 289630
76593
ENSAPLT00000023216
240842 - 288185
47344
ENSAPLT00000009642
249812 - 288185
38374
ENSAPLT00000009639
213038 - 288185
75148