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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27320704_27323572_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27320704 - 27323572
Intron Length:
2869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAT
5'SS Class:
major
3'SS Sequence:
TTTACTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATGTTTTTACTT
Flanking Amino Acid:
ERLKTEIDGLRYYVEESTNV
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
74.1
32
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.5
0.69
1
80.9
36.6
Minor 5ss
32.3
-2
3.4
45.9
49.3
Minor BPS
58.9
0.36
1.6
72.92
39.2

Associated Gene:

Gene:
HAAO
Ensembl Gene ID:
ENSAPLG00000011743
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012260
27304490 - 27338686
34197
ENSAPLT00000041480
27304490 - 27338686
34197
ENSAPLT00000026209
27304434 - 27338686
34253