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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27333375_27337684_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27333375 - 27337684
Intron Length:
4310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTAGCTTTAAAT
Flanking Amino Acid:
AFLPPVCNKLMHRHQLNVMF
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
63
0.49
1.5
74.88
41.6

Associated Gene:

Gene:
HAAO
Ensembl Gene ID:
ENSAPLG00000011743
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041480
27304490 - 27338686
34197
ENSAPLT00000026209
27304434 - 27338686
34253
ENSAPLT00000012260
27304490 - 27338686
34197