Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27679243_27685468_F

Intron Information:

Intron Rank:

141581

Intron Class:

major

Intron Phase:

Intron Coordinates:

27679243 - 27685468

Intron Length:

6226

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTA|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

CTTTCAAAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

CTTCTCTTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

74.3

34.1

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

65.3

0.35

60.3

38.5

Minor 5ss

38.9

-1.3

2.7

34.4

Minor BPS

60.9

0.42

1.6

76.4

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038966

27678805 - 27706022

27218

ENSAPLT00000037669

27614793 - 27685822

71030

ENSAPLT00000028322

27678805 - 27706022

27218