About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27685614_27688712_F

Intron Information:

Intron Rank:
141582
Intron Class:
major
Intron Phase:
Intron Coordinates:
27685614 - 27688712
Intron Length:
3099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTCTTCTTATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.5
0.87
0.6
84.4
23.6
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
56.7
0.07
1.8
63.88
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026261
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028322
27678805 - 27706022
27218
ENSAPLT00000038966
27678805 - 27706022
27218