Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27696629_27696868_F

Intron Information:

Intron Rank:

141585

Intron Class:

major

Intron Phase:

Intron Coordinates:

27696629 - 27696868

Intron Length:

240

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGAACA

5'SS Class:

major

3'SS Sequence:

TGTGCTTTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TCTGTATTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

38.2

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

78.5

0.64

0.9

73.4

37.1

Minor 5ss

32.5

-2

3.1

37.8

Minor BPS

52.1

0.06

1.8

65.08

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029494

27696377 - 27697114

738