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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27699433_27705944_F

Intron Information:

Intron Rank:
141592
Intron Class:
major
Intron Phase:
Intron Coordinates:
27699433 - 27705944
Intron Length:
6512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TTAACCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
66.6
0.6
1.6
81.65
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026261
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038966
27678805 - 27706022
27218