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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27716929_27717445_F

Intron Information:

Intron Rank:
137997
Intron Class:
major
Intron Phase:
Intron Coordinates:
27716929 - 27717445
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TATGATTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CCTTTCCGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.6
0.51
0.9
66
40.3
Minor 5ss
36.8
-1.5
2.6
42.8
44
Minor BPS
53.5
0.19
1.9
72.93
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024275
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034213
27716806 - 27719786
2981