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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27717535_27718273_F

Intron Information:

Intron Rank:
137998
Intron Class:
major
Intron Phase:
Intron Coordinates:
27717535 - 27718273
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTGTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
32.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.7
0.78
0.8
76.4
37.6
Minor 5ss
40.7
-1
3.1
54.8
43.3
Minor BPS
67.4
0.63
2
88.99
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024275
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034213
27716806 - 27719786
2981