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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_27904916_27906612_F

Intron Information:

Intron Rank:
134903
Intron Class:
major
Intron Phase:
Intron Coordinates:
27904916 - 27906612
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.9
77.2
41.4
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
58
0.33
1.8
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022569
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041445
27904154 - 27906898
2745