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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28221691_28222858_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28221691 - 28222858
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTCTA
5'SS Class:
major
3'SS Sequence:
TCTTTTTATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CGTTTCCTAATT
Flanking Amino Acid:
PQQGLEASALEEDDNLFDKG
Intron Amino Acid Position:
1813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
72.6
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.4
0.62
1
83.4
31
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
61.7
0.44
1.7
76.83
40

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244