About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28251831_28254379_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28251831 - 28254379
Intron Length:
2549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TTTCTCCCATGT
Flanking Amino Acid:
VMHLLQNHQQISEEVLKKWV
Intron Amino Acid Position:
1668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
87.4
0.84
0.7
84.9
30
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
41.7
-0.5
2.2
66.08
44.3

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244