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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28254453_28256225_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28254453 - 28256225
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTCTTTATCT
Flanking Amino Acid:
WSLNTVDTYNSAEIQSVALK
Intron Amino Acid Position:
1643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
95.5
1.02
0.5
95.9
14.1
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
74.4
0.84
1.5
88.63
36.3

Associated Gene:

Gene:
THADA
Ensembl Gene ID:
ENSAPLG00000010472
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010987
28221349 - 28380592
159244